UNC surveillance report -

Contributors: Jeremy Wang, Alexander Rubinsteyn, Corbin Jones, Melissa Miller, Robert Hagan, Amy James Loftis, Amir Barzin, Susan Fiscus

Total:
genomes

Including samples through:

We are conducting ongoing surveillance of the SARS-CoV-2 genotypes circulating in central NC. We collect leftover material from nasopharyngeal swab samples that tested qPCR positive at UNC Hospitals. We performed whole-genome nanopore sequencing based on tiled PCR amplification targeting SARS-CoV-2 using all or a subset of ARTIC primers.

Contact: unc@cov2seq.org

Variant trends

Zoom out to see older data
Recent lineages
Lineage counts will include unaliased sublineages thereof (ex. BA.2 will include BA.2.75 but not BN.1)

Add another lineage: